scGeneScope: A Treatment-Matched Single Cell Imaging and Transcriptomics Dataset and Benchmark for Treatment Response Modeling
#1617 · Joel Dapello, Marcel Nassar, Ridvan Eksi, Ban Wang, Jules Gagnon-Marchand, Kenneth Gao, akram Baharlouei, Kyra Thrush, Nina Riehs, Amy Peterson, Aniket Tolpadi, Abhejit Rajagopal, Henry Miller, Ashley Conard, David Alvarez-Melis, Rory Stark, Simone Bianco, Morgan Levine, Ava Amini, Alex X Lu, Nicolo Fusi, Ravi Pandya, Valentina Pedoia, Hana El-Samad
We create a perturbationally-paired single cell imaging and transcriptomics dataset and benchmark and evaluate unimodal, multimodal, and multisample imaging and scRNA-seq models for treatment response modeling; HF data access token in zip.
